57 skills found · Page 1 of 2
ablab / SpadesSPAdes Genome Assembler
trinityrnaseq / TrinityrnaseqTrinity RNA-Seq de novo transcriptome assembly
BirolLab / RNA Bloom:hibiscus: reference-free transcriptome assembly for short and long reads
blahah / TransrateUnderstand your transcriptome assembly
harvardinformatics / TranscriptomeAssemblyToolsA collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.
BirolLab / Transabyssde novo assembly of RNA-seq data using ABySS
cboursnell / TransfuseMerge transcriptome assemblies
cfarkas / Annotate My GenomesA genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
biomendi / TRANSCRIPTOME ASSEMBLY PIPELINEA practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
PalMuc / TransPiTransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
transXpress / TransXpresstransXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
ablab / RnaquastQuality assessment of de novo transcriptome assemblies from RNA-Seq data
bioinformatics-centre / BayesemblerA Bayesian method for doing transcriptome assembly from RNA-seq data
blahah / AssemblotronAutomated optimisation of de-novo transcriptome assembly
dib-lab / Dib MMETSPCode to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
nf-core / DenovotranscriptA pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
bpucker / MYB AnnotatorThis tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
NCGAS / De Novo Transcriptome Assembly PipelineCombined de novo transcriptome assembly - multiple assemblers - multiple parameters
macmanes-lab / Oyster River ProtocolOfficial Repository of the Oyster River Protocol for Transcriptome Assembly
bpucker / KIPEsKnowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
