29 skills found
COMBINE-lab / Salmon🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
gpertea / StringtieTranscript assembly and quantification for RNA-Seq
GoekeLab / BambuReference-guided transcript discovery and quantification for long read RNA-Seq data
ablab / IsoQuantTranscript discovery and quantification with long RNA reads (Nanopores and PacBio)
mortazavilab / TALONTechnology agnostic long read analysis pipeline for transcriptomes
thelovelab / TximportTranscript quantification import for modular pipelines
nunofonseca / Irapintegrated RNA-seq Analysis Pipeline
thelovelab / TximetaTranscript quantification import with automatic metadata detection
PavlidisLab / Rnaseq PipelineRNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
ruolin / StrawberryA program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
eudoraleer / ScasaSCASA: Single cell transcript quantification tool
zzj / RNASkimRNA-Skim: a rapid method for RNA-Seq quantification at transcript level
lweasel / PiquantA pipeline to assess the quantification of transcripts.
GoekeLab / Bambu Singlecell SpatialTranscript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
Christina-hshi / PsircFull-length linear and circular transcript isoform reconstruction and quantification
Bioinformatics-Support-Unit / Transcriptome Quantificationscripts and data for the comparison found at http://sjcockell.me/2015/05/18/alignment-free-transcriptome-quantification/
NCBI-Hackathons / SimpleGeneExpressionPrograms to quantify expression of transcripts from public datasets
czhu / FulQuantFulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data
HCBravoLab / YanagiTranscript Segment Library Construction for RNA-Seq Quantification
parklab / EmsarEMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)
