97 skills found · Page 1 of 4
mahmoodlab / CLAMOpen source tools for computational pathology - Nature BME
BioinformaticsFMRP / TCGAbiolinksTCGAbiolinks
MarvinLer / Tcga SegmentationWhole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
mdozmorov / TCGAsurvivalScripts to analyze TCGA data
KatherLab / STAMPSolid Tumor Associative Modeling in Pathology
PoisonAlien / TCGAmutationsR data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
biocore / TcgaMicrobial analysis in TCGA data
mxxdxxx / FirebrowseRAn R client for broads firehose pipeline, providing TCGA data sets
isb-cgc / Examples PythonAnalysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
sigven / OncoEnrichRExplore the cancer relevance of your gene list
RTCGA / RTCGADownload, integration and visualizations of the variety & volume of TCGA data.
BioinformaticsFMRP / TCGAWorkflowTCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
immunitastx / Coding Exercise TCGA Infiltrationcoding exercise using TCGA immune infiltration data
waldronlab / CuratedTCGADataCurated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
BioinformaticsFMRP / TCGAbiolinksGUITCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
cpreid2 / Gdc Rnaseq ToolTool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
davidnboone / Tcga Brca Rnaseqjupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
cooperlab / TCGAIntegratorPython utilities for building integrated views of TCGA data.
isb-cgc / Examples RAnalysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
rezacsedu / Multimodal Autoencoder For Breast CancerPrognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data
