90 skills found · Page 1 of 3
DerrickWood / Kraken2The second version of the Kraken taxonomic sequence classification system
Ecogenomics / GTDBTkGTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
metagenome-atlas / AtlasATLAS - Three commands to start analyzing your metagenome data
OpenHelix-Team / Awesome VLA RLThis repository summarizes recent advances in the VLA + RL paradigm and provides a taxonomic classification of relevant works.
bioinformatics-centre / KaijuFast taxonomic classification of metagenomic sequencing reads using a protein reference database
MGXlab / CAT PackCAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
DerrickWood / KrakenKraken taxonomic sequence classification system
MicrobeLab / DeepMicrobesDeepMicrobes: taxonomic classification for metagenomics with deep learning
pirovc / Ganonganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
dnbaker / BonsaiBonsai: Fast, flexible taxonomic analysis and classification
FOI-Bioinformatics / FlextaxdFlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
rnajena / BertaxTaxonomic classification of DNA sequences
USC-InfoLab / NeuroGNNNeuroGNN is a state-of-the-art framework for precise seizure detection and classification from EEG data. It employs dynamic Graph Neural Networks (GNNs) to capture intricate spatial, temporal, semantic, and taxonomic correlations between EEG electrode locations and brain regions, resulting in improved accuracy. Presented at PAKDD '24.
netgen / TagsBundleNetgen Tags Bundle is an eZ Platform bundle for taxonomy management and easier classification of content, providing more functionality for tagging content than ezkeyword field type included in eZ Platform kernel.
JensUweUlrich / TaxorFast and space-efficient taxonomic classification of long reads
taxprofiler / TaxpastaTAXnomic Profile Aggregation and STAndardisation
AlexanderLabWHOI / EUKuleleAutomatic eukaryotic taxonomic classification
hallamlab / TreeSAPPA Python package for gene-centric taxonomic and functional classification using phylogenetic placement
andybywire / Sanity Plugin Taxonomy ManagerCreate and manage SKOS compliant taxonomies, thesauri, and classification schemes in Sanity Studio.
CakeCrusher / TaxonomySynthesisAn AI-driven framework for synthesizing adaptive taxonomies, enabling automated data categorization and classification within dynamic hierarchical structures.
