22 skills found
tabixio / TabixTabix.io UI
pysam-developers / PysamPysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
smi2 / Clickhouse FrontendProject rename TABIX, this repo depreciation see https://tabix.io/doc/ https://github.com/smi2/tabix.ui
samtools / TabixNote: tabix and bgzip binaries are now part of the HTSlib project.
slowkow / Pytabix:card_index: Retrieve data in genomic intervals with a Python interface for tabix.
tao-bioinfo / Gff3sortGFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
zhanxw / SeqminerQuery sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
Bioconductor / RsamtoolsBinary alignment (BAM), FASTA, variant call (BCF), and tabix file import
vcflib / TabixppC++ wrapper to tabix indexer
GMOD / Tabix JsRead Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
RajLabMSSM / CatalogueREasy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
alfimovd / Jupyter Clickhouse TabixDocker compose for data analysis
brentp / Bixtabix file access with golang using biogo machinery
cschin / Multi Tabixmulti_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
pysam-developers / Pysam2[WORK IN PROGRESS]: Pysam2 is a module for Python 3.6 or newer for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib v2 C-API, the same one that powers samtools, bcftools, and tabix.
bejobioinformatics / TabixpyTabix reader written 100% in Python
schesa / Clickhouse Tabixdocker-compose for tabix, clickhouse-server and mariadb
yuri-karpovich / TabixNo description available
throwern / Bio TabixRuby binding for the tabix file indexing routines within the samtools package http://samtools.sourceforge.net/
jsa-aerial / Js Local VcfJavascript local VCF and Tabix index file parsing and processing
