12 skills found
schneebergerlab / PlotsrTool to plot synteny and structural rearrangements between genomes
Farre-lab / SyntenyPlotteRR package to draw syntenic plots in 3 different styles
simonhmartin / AsyntGenome alignment and synteny plots
slimsuite / ChromsynChromosome-level synteny plotting using orthologous regions
shingocat / SyntenyPlotByRplot genome alignment synteny
Tim-Kirkwood / SyntenyQCWant to make a neighbourhood-scale synteny plot? Have too many genomic neighbourhoods? SyntenyQC may help!
charlottewright / Synteny PlotterA tool to visualise synteny relationships between genomes.
NBISweden / Synteny Plots With JcviStep-by-step tutorial to create synteny plots for pairs and trios of genomes using JCVI's MCScan
Amjad-Khalaf / HyraxDotPlotHyraxDotPlot easily generates interactive and annotated dot plots allowing synteny to be visualised between two genomes, down to 1 bp resolution. It supports loading qualitative feature bed files as highlighted regions on the plot (e.g. gene presence); quantitative bed files as tracks (e.g.: read coverage); & annotation bed files as tracks.
MatthewHaas / Synteny Plot TutorialNo description available
rotheconrad / 00 Contig SyntenyBuild Gene Arrow Plot for Contig Synteny Across Multiple Contigs
RegenImm-Lab / NovabrowseNovabrowse a BLAST results interpretation tool and sequence alignment viewer for gene synteny analysis, gene position on chromosome visualization, and comparative genomics tool for multi-species ortholog identification
