36 skills found · Page 1 of 2
scverse / SpatialdataAn open and interoperable data framework for spatial omics data
gustaveroussy / SopaTechnology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
osgeonepal / GeotileGeoTile is the python library for tiling the geographic raster data (eg. Tiff etc)
scverse / Spatialdata IoNo description available
scverse / Napari SpatialdataInteractive visualization of spatial omics data
scverse / Spatialdata PlotStatic plotting for spatialdata
scverse / Spatialdata NotebooksNo description available
saeyslab / HarpySingle-cell spatial omics analysis that makes you happy!
Spatial-Data-Science-and-GEO-AI-Lab / GreenExp RThis is a R toolkit and developer version package to estimate multidimensional aspects of greenness and nature exposure, such as availability, accessibility and visibility using various geospatial data and models
AdamWilsonLabEDU / SpatialDataScienceIntroduction to Data Science with R
SymbolixAU / SpatialdatatableConvenience functions for doing spatial calculations on data.tables
quentinblampey / Spatialdata Xenium ExplorerInteroperability between SpatialData and the Xenium Explorer
HelenaLC / SpatialDataNo description available
M4i-Imaging-Mass-Spectrometry / ThyraA modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
nf-core / SopaNextflow version of Sopa - spatial omics pipeline and analysis
metaspace2020 / Metaspace ConverterDownload and Convert METASPACE datasets to common formats such as AnnData or SpatialData
giovp / Spatialdata SandboxNo description available
MannLabs / Dvp IoRead/write functions to and from spatialdata for Deep Visual Proteomics
PMBio / Spatialdata WorkshopsNo description available
theislab / Spatialdata DbNo description available
