210 skills found · Page 1 of 7
snakemake / SnakemakeThis is the development home of the workflow management system Snakemake. For general information, see
maxplanck-ie / SnakepipesCustomizable workflows based on snakemake and python for the analysis of NGS data
liulab-dfci / MAESTROSingle-cell Transcriptome and Regulome Analysis Pipeline
snakemake-workflows / Dna Seq Gatk Variant CallingThis Snakemake pipeline implements the GATK best-practices workflow
csoneson / ARMORLight-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
snakemake-workflows / DocsDocumentation of the Snakemake-Workflows project
ale94mleon / BindFlowA snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS
Hoohm / DropSeqPipeA SingleCell RNASeq pre-processing snakemake workflow
snakemake-workflows / Snakemake Workflow TemplateA template for standard compliant snakemake-workflows
epigen / Atacseq PipelineUltimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
harvardinformatics / SnparcherSnakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
snakemake-workflows / Dna Seq VarlociraptorA Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
GooglingTheCancerGenome / Sv CallersSnakemake-based workflow for detecting structural variants in genomic data
epigen / Enrichment AnalysisA Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
snakemake-workflows / Rna Seq Kallisto SleuthA Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
bhattlab / Kraken2 ClassificationSnakemake workflow for metagenomic classification with Kraken2
Wytamma / SnkSnakemake workflow management system and CLI generation tool
epigen / Unsupervised AnalysisA general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
bigginlab / ABFE WorkflowThis is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.
snakemake / Snakemake Github ActionA Github action for running a Snakemake workflow
