111 skills found · Page 1 of 4
mikolmogorov / FlyeDe novo assembler for single molecule sequencing reads using repeat graphs
marbl / CanuA single molecule sequence assembler for genomes large and small.
wallnerlab / DockQDockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
PacificBiosciences / IsoSeqIso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
aquaskyline / ClairvoyanteClairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
PacificBiosciences / CcsCCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
TuragaLab / DECODEThis is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
xjtu-omics / SVisionDetecting genome structural variants with deep learning in single molecule sequencing
xiaochuanle / MECATMECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
EliHei2 / Segger Deva cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).
PacificBiosciences / BarcodingLima - Demultiplex Barcoded PacBio Samples
pb-jchin / VariantNETA simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
EliasNehme / Deep STORMOfficial implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"
imodpasteur / ANNA PALMAccelerating Single Molecule Localization Microscopy with Deep Learning
BiomedSciAI / Biomed Multi AlignmentWe introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple modalities, including proteins, small molecules, and single-cell gene data.
usnistgov / MosaicA modular single-molecule analysis interface
nanoporetech / Pipeline Umi AmpliconWorkflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
molovol / MoloVolMoloVol is a free, cross-plattform, scientific software for volume and surface computations of single molecules and crystallographic unit cells.
fiberseq / FIREA Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
PacificBiosciences / KineticsToolsTools for detecting DNA modifications from single molecule, real-time sequencing data
