2,409 skills found · Page 1 of 81
seandavi / Awesome Single CellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
satijalab / SeuratR toolkit for single cell genomics
scverse / ScanpySingle-cell analysis in Python. Scales to >100M cells.
matklad / Once CellRust library for single assignment cells and lazy statics without macros
scverse / Scvi ToolsDeep probabilistic analysis of single-cell and spatial omics data
theislab / Single Cell TutorialSingle cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Starlitnightly / OmicverseA python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
sqjin / CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
chanzuckerberg / CellxgeneAn interactive explorer for single-cell transcriptomics data
broadinstitute / InfercnvInferring CNV from Single-Cell RNA-Seq
cafferychen777 / MLLMCelltypeCell type annotation for single-cell RNA-seq using multi-LLM consensus
immunogenomics / HarmonyFast, sensitive and accurate integration of single-cell data with Harmony
zhanghao-njmu / SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
aertslab / PySCENICpySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
jinworks / CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
scverse / SquidpySpatial Single Cell Analysis in Python
chris-mcginnis-ucsf / DoubletFinderR package for detecting doublets in single-cell RNA sequencing data
Teichlab / Scg Lib StructsCollections of library structure and sequence of popular single cell genomic methods
aertslab / SCENICSCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
vanvalenlab / Deepcell TfDeep Learning Library for Single Cell Analysis
