302 skills found · Page 1 of 11
zhanghao-njmu / SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
chris-mcginnis-ucsf / DoubletFinderR package for detecting doublets in single-cell RNA sequencing data
broadinstitute / CellBenderCellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
pwwang / Scplotterscplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
NBISweden / Workshop ScRNAseqSingle cell RNA sequencing analysis course
ZJUFanLab / ScCATCHAutomatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
plger / ScDblFinderMethods for detecting doublets in single-cell sequencing data
Oshlack / SplatterSimple simulation of single-cell RNA sequencing data
dtm2451 / DittoSeqColor blindness friendly visualization of single-cell and bulk RNA-sequencing data
COMBINE-lab / Alevin Fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
theislab / KBETAn R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
rezakj / ICellRiCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. It supports a variety of single-cell technologies, including scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq, and Spatial Transcriptomics (ST).
igrabski / Sc SHCSignificance analysis for clustering single-cell RNA-sequencing data
tanaylab / MetacellsMetacells - Single-cell RNA Sequencing Analysis
KChen-lab / MonopogenSNV calling from single cell sequencing
OpenGene / ScrnapipA Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
ygidtu / Trackplottrackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
atarashansky / SAMapSAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
mourisl / CentrifugerTaxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
catavallejos / BASiCSBASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
