22 skills found
zhanghao-njmu / SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
10XGenomics / LoupeRConvert Seurat objects to 10x Genomics Loupe files.
basilkhuder / Seurat To RNA VelocityA guide to using a Seurat object in conjunction with RNA Velocity
Dragonmasterx87 / Interactive 3D Plotting In Seurat 3.0.0This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
milescsmith / ReductionWrappersR wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
dosorio / RPanglaoDBAn R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
kpatel427 / Multiome AnalysisScripts for sincle cell multiome analysis
settylab / Convert2anndataAn R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.
erebboah / Enc4 MouseScripts to import ENCODE processed data for snRNA-seq experiments and snATAC-seq experiments to Seurat and ArchR objects, respectively.
JGASmits / AnanseSeuratSingle cell ANANSE Gene-regulatory-network analysis from Seurat objects
elliefewings / DoMultiBarHeatmapCreate multibar annotated heatmap for Seurat object
PrashINRA / BootStrapSCBootStrap on Seurat (single cell object) to evaluate cluster stability.
lsteuernagel / MapscviMap single cell expression data into a reference scvi latent space and reference umap using R and Seurat. Use included objects to map new data to HypoMap.
bio-xtt / SgsAnnDataV2A package used to convert Seurat, Giotto, Signac, ArchR analysis object into AnnData format
Dragonmasterx87 / Merging Multiple Seurat ObjectsHello there! Some code on how to merge >2 Seurat objects and maintain object identity :)
WilsonWukz / SubClusterToolSubclustering and Merging Tool for Seurat Objects
mojaveazure / GgseuratMethods to allow Seurat objects to be visualized with ggplot2
cobriniklab / SeuFLVizProcessing, plotting, and interactive eda of full-length scRNA-seq as seurat objects
Rebecza / ScRNA SeqFrom fastq to preprocessed Seurat object, compatable with Kallisto | Bustools (for instance, from the Seq2Science) workflow.
milescsmith / SeuratPlotlyPlot_ly-based plotting functions for use with Seurat objects
