27 skills found
YuLab-SMU / Ggmsa:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2
moshi4 / PyMSAvizMSA(Multiple Sequence Alignment) visualization python package for sequence analysis
fbreitwieser / Bamcov:boom: Quickly calculate and visualize sequence coverage in alignment files
jason-weirather / AlignQCLong read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.
BackofenLab / RNA PlaygroundVisualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
thekaplanlab / Msabrowser🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
sanderlab / AlignmentviewerMultiple sequence alignment visualizer
desmid / MviewMView extracts and reformats the results of a sequence database search or multiple alignment.
lipingfangs / VAPa programme for visualization of short sequence alignment and path navigation in graphical pan-genome
Abalign / AbalignA visualization software for antibody multi sequence alignment
Gagniuc / Jupiter Bioinformatics V4Jupiter Bioinformatics is a browser-based tool for interactive pairwise sequence alignment and heatmap visualization. Built on the Smith-Waterman local alignment algorithm, it renders the full scoring matrix as a color-coded heatmap on an HTML5 canvas, no installation, no server, no dependencies. Open the file and start aligning.
yana-safonova / PatchWorkPlotA tool for visualization of pairwise alignments of multiple sequences
biotite-dev / GecosGenerated color schemes for sequence alignment visualizations
BioComputingUP / ProSeqViewerVisualize sequence and multiple sequence alignment (MSA)
DSIMB / PoincareMSADetection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple sequence alignment. While a direct analysis of the resulting data allows to identify conserved regions, it does not provide a general and broad view on the proteins’ hierarchical organization and their distribution in the sequence, structural or functional spaces. Our project aims to develop a novel strategy for multiple sequence alignment visualization and interpretation using a powerful method demonstrated its efficiency for the hierarchy detection in multi-dimensional data sets called Poincaré maps.
larapollehn / RemyVisualization of nucleotide alignment algorithms 🧬 DNA sequence as input, best aligning match as output.
Ahmedhany750 / Phylogenetic Analysis And Protein Sequence Alignment PipelineA Python pipeline for protein sequence alignment and phylogenetic analysis using Biopython and Clustal Omega. Includes distance matrix calculation, UPGMA & NJ tree construction, custom node labeling, and enhanced tree visualizations. Outputs aligned sequences, trees in Newick format, and styled images.
lucanest / MseaboardMSEABOARD: A web-based dashboard for interactive visualization and analysis of multiple sequence alignments, phylogenetic trees, protein structures, distance matrices and associated data.
GenomeView / GenomeviewGenomeView is a stand-alone genome browser and editor. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.
Dfam-consortium / AlignmentSummaryViewerMultiple sequence alignment visualization component
