67 skills found · Page 1 of 3
zhanghao-njmu / SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
liulab-dfci / MAESTROSingle-cell Transcriptome and Regulome Analysis Pipeline
scverse / Muonmuon is a multimodal omics Python framework
aertslab / ScenicplusSCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
pinellolab / STREAMSTREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
sanderlab / ScPerturbscPerturb: A resource and a python/R tool for single-cell perturbation data
mdozmorov / ScATAC Seq NotesscATAC-seq data analysis tools and papers
rezakj / ICellRiCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. It supports a variety of single-cell technologies, including scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq, and Spatial Transcriptomics (ST).
parashardhapola / ScarfToolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
sankaranlab / SCAVENGESCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
alexisvdb / SingleCellHaystackFinding surprising needles (=genes) in haystacks (=single cell transcriptome data).
genecell / COSGRAccurate and fast cell marker gene identification with COSG
aertslab / CREstedCREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for designing cell type-specific sequences.
the-ouyang-lab / ShinyCell2ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.
shiquan / PISAA collection of tools to process single-cell omics datasets.
wukevin / BabelDeep learning model for single-cell inference of multi-omic profiles from a single input modality.
HaojiaWu / CellScopes.jlA Julia package for single cell and spatial data analysis
dbrg77 / Plate ScATAC SeqA rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
colomemaria / EpiAneufinderR package to detect breakpoints and assign somies to scATAC-seq data
buenrostrolab / StimATAC Analyses CodeAll code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
