26 skills found
gear-genomics / TracyBasecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
roblanf / SangeranalyseRfunctions to analyse sanger sequencing reads in R
gear-genomics / DiceyIn-silico PCR, primer design and padlock design for in-situ sequencing
bow / AbifpyModule for reading ABI Sanger sequencing trace files
ponnhide / Sangerseq Viewersangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.
gear-genomics / IndigoIndigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
stuckyb / SeqtraceUser-friendly software for viewing and processing Sanger DNA sequencing trace files.
kevinblighe / ClinicalGradeDNAseqAutomated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
addityea / ASAPAutomated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.
ponnhide / PySangerA Python module to analyze Sanger sequencing results.
y9c / Cfutils🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
BGI-flexlab / SOAPTypingHLA typing for Sanger Based Test
bdaisley / IsolateRAutomated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries
kblin / Covid Spike ClassificationDetect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.
olgabot / Abi2fastqabi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
gear-genomics / SilicaIn-silico PCR amplification on complete genomes
jbloomlab / SangerMutantLibraryAnalysisAnalyze a mutant library based on the results from Sanger sequencing some selected clones
MoriarityLab / MultiEditRMultiEditR: An easy validation method for detecting and quantifying RNA editing from Sanger sequencing
sam-k / Seq Quality TrimmingTrimming Sanger sequencing reads by quality
SmithsonianWorkshops / GeneiousLIMSMaterials for a series on how to use Geneious and its LIMS plugin to document the full Sanger sequencing pipeline.
