14 skills found
genomics-dev / VariantkeyNumerical Encoding for Human Genetic Variants
Michael-Sebero / Genetic Trait DetectorThis python script detects known traits in raw human genetic data.
zhanghaoyang0 / Rsidmapfinds rsid with genomic position for feasible input format.
BioPsyk / CleansumstatsConvert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
UK-Biobank / SNP FilteringThis repo contains a JupyterLab notebook allowing individual SNPs to be filtered from the UKB genotyping data. A few approaches to filtering are provided, including options to filter by individual SNP rsIDs or by genomic regions of interest.
glasgowm148 / PhenotypeAn Open Source Web Application for Genetic Data (SNPs) Data Crawling
bioforensics / RsidxLibrary for indexing VCF files for random access searches by rsID
milospjanic / RsID2BedrsID2Bed is a script to convert SNP rsIDs to a list of genomics positions in a bed format: chr, position, position+1. Script is useful for quick conversion of SNPs to a bed format for downstream analysis (e.g. overlaps with bedtools).
tomasbarcellos / RSIDRANo description available
A-Ben-Mao / RsID To CHR BPAnnotating CHR and BP information of rsID in GWAS. 注释rsID的CHR和BP信息
HTGenomeAnalysisUnit / Rsid ToolsSmall utilities to play with dbSNP rsID: annotate rsID for a var or get position for an rsID
oliviasabik / GTExIdConverterTool for converting GTEx chr:pos IDs to rsIDs
milospjanic / ChrPos2rsIDchrPos2rsID is a script to convert a list of genomics positions in a format: chrno_position_allele1_allele2 to SNP rsIDs. Script will append rsIDs as a column to an existing file. chrPos2rsID is useful for quick conversion of to SNP rsIDs for various downstream analysis and lookups.
milospjanic / MatrixeQTL2LocusZoomScript will use three parameters as inputs, 1) Gene ID from ENSEMBL annotation, 2) chromosome number where the gene is located 3) eQTL file from matrixeQTL and generate output for visualization with LocusZoom Plot containing rsIDs and p-values as columns 1 and 2.
