99 skills found · Page 1 of 4
nf-core / AmpliseqAmplicon sequencing analysis workflow using DADA2 and QIIME2
genomicsITER / NanoCLUSTNanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Zymo-Research / FigaroAn efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
HRGV / PhyloFlashphyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
pr2database / Pr2databaseProtist Ribosomal Reference database (PR2) - SSU rRNA gene database
junchaoshi / Sports1.1Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
merenlab / OligotypingExploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
epruesse / SINASINA - Reference based multiple sequence alignment
hariszaf / PemaPEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
SchlossLab / Topcuoglu ML MBio 2020Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
songweizhi / MarkerMAGLinking MAGs with 16S rRNA marker genes
bonsai-team / MatamMapping-Assisted Targeted-Assembly for Metagenomics
jfmrod / MAPseqhighthroughput rRNA sequence classification and OTU mapping for metagenomic samples
tseemann / Sixess🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
farhadm1990 / 16S RRNA AmpliconAnalysis of (gut) microbiome in Qiime2 and R.
adlape95 / SpaghettiSpaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing
KasperSkytte / AutoTaxGenerate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
genomic-medicine-sweden / TRANAA pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
y9c / PseudoU BIDseq🧪 Pipeline for detecting Ψ modification
anw-sh / Silva 138 ClassifiersClassifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
