35 skills found · Page 1 of 2
flatironinstitute / CaImAn MATLABComplete Matlab pipeline for large scale calcium imaging data analysis
antimodular / Silhouette Segmentation ApproachesThe following is a practical comparison of various techniques of segmenting silhouettes/the general foreground from the background. It is intended as cursory research to inform which approach we use for extracting silhouettes for future installations. We explored two approaches- using a depth cameras + ROI and camera + segmentation.
brianmanderson / Dicom RT And Images To MaskTools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images
tanguyduval / Imtool3D Td3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )
sagieppel / Focusing Attention Of Fully Convolutional Neural Networks On Region Of Interest ROI Input Map This project contains code for a fully convolutional neural network (FCN) for semantic segmentation with a region of interest (ROI) map as an additional input (Figure 1). The net receives image and ROI as a binary map with pixels corresponding to ROI marked 1, and produce pixel-wise annotation of the ROI region of the image. The method is based on using region selective features This code was tested on for semantic segmentation task of materials in transparent vessels where the vessel area of the image was set as the ROI.
JZK00 / Radiomics Research By Using PythonRadiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection, machine learning modeling, and stastical analysis.
59-lmq / ToothSegmentation基于Natrue Compression 论文 进行ROI 网络复现。论文名称A fully automatic AI system for tooth and alveolar bone segmentation from cone-beam CT images
maggieliuzzi / Lidar Obstacle DetectionCropBox ROI filtering | VoxelGrid downsampling | Ground plane segmentation using RANSAC | Euclidean clustering optimised with a k-d tree | Bounding boxes | Custom C++ implementations and PCL.
scottykwok / Cervix Roi Segmentation By UnetNo description available
AngeloUNIMI / PalmSegSource code for palmprint segmentation and ROI extraction used in the IEEE TIFS 2019 and IEEE CIVEMSA 2019 papers
buseyaren / Installation Guide Of MaskrcnnMask R-CNN creates a high-quality segmentation mask in addition to the Faster R-CNN network. In addition to class labels and scores, a segmentation mask is created for the objects detected by this neural network. In this repository, using Anaconda prompt step by step Mask R-CNN setup is shown.
JeffWang0325 / LabelImgTool🖍️ LabelImgTool is a graphical image annotation tool which can label many kinds of object type (ex: Pen, Eraser, Hollow Rectangle, Filled Rectangle, Hollow Circle, Filled Circle, Hollow Ellipse, Filled Ellipse, Rectangle ROI, Irregular Shape ROI) in images. It can be applied to many deep learning fields, including object detection, semantic segmentation, UNet, etc.
ranaroussi / Monthly Returns HeatmapPython Monthly Returns Heatmap (DEPRECATED! Use QuantStats instead)
robertarvind / Interactive Semi Automatic Image 2D Bounding Box Annotation Tool Using Multi Template MatchingInteractive Semi Automatic Image 2D Bounding Box Annotation and Labelling Tool using Multi Template Matching An Interactive Semi Automatic Image 2D Bounding Box Annotation/Labelling Tool to aid the Annotater/User to rapidly create 2D Bounding Box Single Object Detection masks for large number of training images in a semi automatic manner in order to train an object detection deep neural network such as Mask R-CNN or U-Net. As the Annotater/User starts annotating/labelling by drawing a bounding box for a few number of images in the selected folder then the algorithm suggests bounding box predictions for the rest of the yet to be annotated/labelled images in the folder. If the predictions are right then the user/annotater can simply press the keyboard key 'y' which indicates that the detected bounding box is correct. If the prediction is wrong then the user/annotater can manually draw a rectangular 2D bounding box over the correct ROI (Region of interest) in the image and then press the key 'y' to proceed further to the rest of the images in the folder. If the user/annotater made a mistake while drawing the 2D bounding box, then he/she can press the key 'n' in order to remove the incorrectly marked 2D bounding box and he/she can repeat the process for the same image until he/she draws the correct 2D bounding box and then after drawing the correct 2D bounding box, the user/annotater may press the key 'y' to continue to the rest of the images. The 2D bounding box prediction over the whole image data set improves as the user/annotater annotates/labels more number of images by drawing 2D bounding boxes. This tool allows the user/annotater to not only interactively and rapidly annotate large number of images but also to validate the predictions at the same time interactively. This tool helps the user/annotater to save a lot of time when annotating/labelling and validating the predictions for a large number of training images in a folder. Instructions to use:- 1. If the training images are in JPEG or any other format, then convert them to PNG format using some other tool or program before using these images for annotation. 2. All the training images must contain the object of interest which is to be annotated. 3. Currently the application only supports 2D bounding box annotation for single object detection per image, but in the future semantic segmentation based annotation features will be added which will allow precise boundary segmentation masks of an object in an image. 4. If some or all of the training images have varying dimensions(shapes/resolutions), then resize them to the same dimensions using this tool by providing the height and width to which all the training images need to be resized to. The height and width are inputed separately in two different dialog boxes which pop up once the program is executed. If the training images need not be resized then press the cancel button in the dialog boxes requesting the height and width. 5. Select the folder containing the training images by navigating to the folder containing the training images through a dialog box which pops up after the program is executed. If the images need to be resized then two dialog boxes pop up. The first dialog box is to navigate to the destination folder containing the unresized raw training images and after resizing another dialog box pops up to navigate to the folder containing the saved resized training images named as "resized_data". If the images need not be resized then only one dialog box pops up so that the user can navigate to the raw training images folder directly. 6. The images in the folder pop up one by one. After drawing the correct 2D bounding box over the ROI (region of Interest), press the 'y' key. Except the first image, the rest of the images will have a 2D bounding box drawn over them. If the predicted box is accurate, then continue by pressing the 'y' key. If the prediction is incorrect, then draw the accurate bounding box and press the 'y' key. If any mistake occured while drawing the 2D box, then reset the image by removing the incorrect drawing by pressing the 'n' key and then draw the correct box and press the 'y' key. 7. The output images are stored in four different folders in the same directory containing the training images folder. among the four folders, one contains the cropped templates of the bounding boxes, black and white mask images, training images and the images with 2D box detection markings.
PINTO0309 / Human Instance SegmentationROI-based Instance Segmentation for Human Detection (CNN)
sagieppel / Pointer Based Segmentation Find Segment Containing Given Image Point Witin Given ROI Mask Using CNNCategory independent sequential image segmentation. Find a segment containing a given image pixel within a given attention mask using a convolutional neural network (CNN), and its application for sequential region-by-region instance-aware segmentation of images with unfamiliar categories.
SeongHyunBae / Robust Lane Detection And Tracking ICNet KF Keras ROSThis project is to detect lane using deeplearning based segmentation(ICNet) and moving ROI. And it tracks lane using Kalman filter.
Amin-Tgz / OpenCV Select Non Rect ROISelect non rectangular ROI in video
gellston / FastROIThe FAST ROI library is useful for quickly extracting the coordinates of a rotating rectangular ROI
cpathology / NucleiSegHEH&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
