10 skills found
alexdobin / STARRNA-seq aligner
nf-core / ScrnaseqSingle-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
epigen / Genome TracksA Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
10XGenomics / Rust PseudoalignerSingle-Cell RNA-seq pseudo-aligner
masai1116 / SHARE Seq Alignmentpipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
hanielcedraz / BAQCOMQuality Control, Mapping and Reads Count for RNA-Seq Analysis
MaayanLab / RNA Seq BenchmarkingR codes for the benchmarking of 2 aligners (STAR and Kallisto) and 6 differential expression analysis methods (DESeq2, edgeR, limma-voom, CD, t-test, fold change) in RNA-Seq
Mashin6 / Detect MutationsPython script for detecting mutations in aligned reads (.bam |.sam) e.g. from RNA base conversion techniques such as TimeLapse, SLAM-seq, TUC-seq
Shao-Group / Rnabridge Alignrnabridge-align is an efficient tool to bridge paired-end RNA-seq reads
bixBeta / CFGRNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls
