33 skills found · Page 1 of 2
GoekeLab / XporeIdentification of differential RNA modifications from nanopore direct RNA sequencing
novoalab / EpiNanoDetection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
tleonardi / NanocomporeRNA modifications detection from Nanopore dRNA-Seq data
dincarnato / RNAFrameworkRNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
Tsedao / MultiRM[Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications'
novoalab / NanoRMSPrediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
lrslab / NanoSundialA de novo modification detection tool that targets current features based on 004kit for prokaryotes
DepledgeLab / DRUMMERDRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
zhangjun640 / MultiNanoMultiNano is a deep learning framework designed for predicting m6A RNA modifications using raw electrical signals from Oxford Nanopore sequencing. It provides high accuracy across species and conditions, offering a user-friendly pipeline for researchers. MultiNano supports both training from scratch and direct prediction modes.
uedaLabR / NanoDocRNA modification detection using Nanopore raw reads with Deep One Class classification
novoalab / ModPhredmodPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
awjga / PORE CupineFirst version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
physnano / RRNA NanoSHAPECode accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
guangzhaocs / SegPoreSegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
mem3nto0 / ModiDeC RNA Modification ClassifierNo description available
JiejunShi / NaRMBenchSystematic evaluation of computational tools for multitype RNA modification detection using nanopore direct RNA sequencing
a-slide / MetaComporeMetacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing
ldascenzo / PytheasSoftware to identify and map RNA modifications via LC-MS/MS
comprna / SWARMSingle-molecule Workflow for Analysing RNA Modifications
rnabioco / TRNA004Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
