20 skills found
ml4bio / RhoFoldNature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
lbcb-sci / RiNALMoRiboNucleic Acid (RNA) Language Model
yikunpku / RNA MSMNucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.
terry-r123 / RNABenchmark[NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
CatIIIIIIII / RNAErnieOfficial implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
Bruce-ywj / ERNIE RNACode of a structure-enhanced RNA language model named ERNIE-RNA
hanrthu / CoPRA[AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction
ZhangLab-Kiz / DeepCellSeekLarge Language Models for Single-Cell RNA-Seq Annotation
GuipengLi / HydraRNAHydraRNA is a full-length RNA language model.
Bhattacharya-Lab / ProRNA3D SingleSingle-sequence protein-RNA complex structure prediction with biological language models
zhw-e8 / LAMARA Foundation Language Model For Multilayer Regulation of RNA
Zimiao1025 / BioSeq BLMBioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models
sinc-lab / Rna Llm FoldingComprehensive benchmarking of Large Language Models for RNA secondary structure prediction," by L.I. Zablocki, L.A. Bugnon, M. Gerard, L. Di Persia, G. Stegmayer, D.H. Milone, Briefings in Bioinformatics, 2025
ciceklab / RNAtranslatorRNAtranslator: Modeling protein-conditional RNA design as sequence-to-sequence natural language translation
Amelie-Schreiber / Esm2 LoRA Binding SitesTraining a Low Rank Adaptation of the protein language model ESM-2 for RNA binding site predictor
JinyuanSun / ElmsuiteSimple, unified interface to multiple evolutionary language models (including Protein, DNA, and RNA))
CSUBioGroup / RNALoc LMA pre-trained RNA language model powered for RNA subcellular localization prediction.
ylab-hi / DeepChopperGenomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing
yikunpku / RESMThis is the official codebase for RESM: Capturing sequence and structure encoding of RNAs by mapped transfer learning from ESM (evolutionary scale modeling) protein language model
aster-ww / CANAL TorchContinually adapting pre-trained language model to universal annotation of single-cell RNA-seq data
