45 skills found · Page 1 of 2
Lattice-Automation / Seqfoldnucleic acid folding
divnori / RnaflowRNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
NVIDIA-Digital-Bio / RNAProRNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Kaggle competition.
ml4bio / RiboDiffusionISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
srnas / BarnabaAnalyse Nucleic Acids Structure and Simulations with baRNAba
AspirinCode / Awesome BioMolGenFoldRNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
autosome-ru / Vigg RibonanzaSource code of the Stanford Ribonanza RNA Folding first place solution
Koeng101 / DnadesignA lua package for designing DNA.
LinearFold / LinearPartitionLinear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
rkruegs123 / Jax RnafoldDifferentiable RNA folding in JAX
marcom / ViennaRNA.jlJulia interface to ViennaRNA for RNA structure prediction and analysis
mjendrusch / NimnaDNA/RNA folding in Nim
sinc-lab / LncRNA FoldingSecondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. Di Persia, D.H. Milone & G. Stegmayer, Briefings in Bioinformatics, 2022.
hoyso48 / Stanford Ribonanza RNA Folding 2nd Place SolutionNo description available
automl / ProbTransformerProbabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design
dwave-examples / Rna FoldingFinds the optimal stem configuration of an RNA sequence using the LeapHybridCQMSampler.
tattaka / Stanford Ribonanza Rna Folding PublicStanford Ribonanza RNA Folding 4th place solution
tsudalab / MCTS RNAMCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precisely.
sinc-lab / Rna Llm FoldingComprehensive benchmarking of Large Language Models for RNA secondary structure prediction," by L.I. Zablocki, L.A. Bugnon, M. Gerard, L. Di Persia, G. Stegmayer, D.H. Milone, Briefings in Bioinformatics, 2025
marcom / RNAstructure.jlJulia interface to the RNAstructure program suite for RNA structure prediction and analysis
