40 skills found · Page 1 of 2
LabTranslationalArchitectomics / RiboWaltzoptimization of ribosome P-site positioning in ribosome profiling data
xryanglab / RiboCoderelease version
zhpn1024 / RibotishRibo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
smithlabcode / RibotricerA tool for accurately detecting actively translating ORFs from Ribo-seq data
alexfields / ORF RATERRegression-based annotation of protein-coding sequences from ribosome profiling data
riboviz / RibovizAnalysis and Visualization of Ribosome Profiling Data
nf-core / RiboseqPipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
zhejilab / RibORFIdentifying genome-wide translated open reading frames using ribosome profiling
xryanglab / XtailGenome-wide assessment of differential translations with ribosome profiling data
ribosomeprofiling / RiboflowPipeline for Ribosome Profiling Data
xryanglab / RiboMinera toolset for mining multi-dimensional features of the translatome with ribosome profiling data
junjunlab / RiboTransVisA Package for Ribosome Profiling Data Analysis
Biobix / ProteoformerIntegration ribosome profiling - mass spectrometry
RickGelhausen / HRIBOWe present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
XPRESSyourself / XPRESSpipeAn alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
Biochemistry1-FFM / UORF ToolsuORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
saketkc / RiboraptorTool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
LUMC / Ribosome Profiling Analysis FrameworkRibosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.
shahpr / RiboVizAnalysis and Visualization of Ribosome Profiling Data
smithlabcode / RiborexRiborex: Fast and flexible identification of differential translation from Ribo-seq data
