28 skills found
VerisimilitudeX / DNAnalyzerPrecision genomics for everyone, everywhere. Powered by private AI.
Danko-Lab / DREGDetecting Regulatory Elements using GRO-seq and PRO-seq
Genentech / PolygraphPolygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
yifeng-li / DECRESDeep learning for identifying cis-regulatory elements and other applications
weng-lab / ENCODE CCREsPipelines to create and analyze ENCODE candidate cis-Regulatory Elements
yupenghe / REPTILEPredicting regulatory DNA elements based on epigenomic signatures
fiberseq / FIREA Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
gagneurlab / SpeciesLMSpecies-aware DNA language models capture regulatory elements and their evolution
PFPrzytycki / CellWalkRCellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
schmitzlab / Widespread Long Range Cis Regulatory Elements In The Maize Genomescripts used for processing and analyzing data in the article.
corbinq / GAMBITTool for integrative gene-based association analysis using GWAS summary stats
spundhir / PAREPARE: a computational method to Predict Active Regulatory Elements
SchulzLab / STITCHITLearning gene-specific regulatory elements from epigenetic data
shenlab-sinai / DeepRegFinderDeepRegFinder is a deep learning based program used to identify DNA regulatory elements using ChIP-seq
meuleman / SynthSeqsData-driven design of context-specific regulatory elements
Mathelab / ALTREALTered Regulatory Elements
hillerlab / REforgeRegulatory Element Forward Genomics to associate transcription factor binding site divergence in regulatory elements with phenotypic differences between species
AMSSwanglab / VPECAvPECA is a Variants interpretation method by Paired Expression and Chromatin Accessibility data which can identify active and active selected regulatory elements and their gene regulatory network.
aertslab / IRegulonA regulon consists of a transcription factor (TF) and its direct transcriptional targets, which contain common TF binding sites in their cis-regulatory control elements. The iRegulon plugin allows you to identify regulons using motif and track discovery in an existing network or in a set of co-regulated genes.
Avsecz / ConciseCONCISE (COnvolutional neural Networks for CIS-regulatory Elements)
