26 skills found
pirovc / Genome Updatergenome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.
NLM-DIR / VadrViral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
pirovc / Ganonganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
oschwengers / ReferenceseekerRapid determination of appropriate reference genomes.
muellan / Metacachememory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
JensUweUlrich / TaxorFast and space-efficient taxonomic classification of long reads
phac-nml / Refseq MasherMash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
fsprojects / BioProvidersF# library for accessing and manipulating bioinformatic datasets.
NCBI-Hackathons / Master Gff3 ParserConvert sequence IDs between ucsc/refseq/genbank
sschmeier / Refseq2krakenDownload refseq-genomic data and prepare it for Kraken
dfguan / DeSPIfast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
axbazin / DrawbankDraws genbank or refseq genome count through time, indicating most common species and filtering on specific groups
chopdgd / Django GenomeDjango app for dealing with Human Genome Reference data and keeping it up to date. Syncs data from HGNC and UCSC (RefSeq, etc)
ryjohnson09 / Bacteria Genome PullDownload latest bacterial sequencing assembly files from NCBI database (RefSeq or Genbank)
AngieHinrichs / Viral UsherEasily build an UShER tree of genomes for any virus in RefSeq/GenBank
dnasko / Refseq RollbackA collection of scripts to recreate historical RefSeq versions
CO-DKFZ / GeneSummaryRefSeq Gene Summaries
pmenzel / Download Refseq GenomesPerl script to download genomes within a clade from NCBI Refseq
dritoshi / GenesearchrFast full-text search in NCBI RefSeq, UniProt-KB and Genome DNA sequence
gvlproject / Galaxy Refseq LibrariesScript to make data library of RefSeq reference genomes for specified genus
