27 skills found
YuLab-SMU / ReactomePAReactome Pathway Analysis
reactome / Reactome2pypython client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
opencog / GenerateGenerate networks from syntax (e.g. natural language, math proofs, action plans, biome/reactome nets)
reactome / ReactomeGSAR client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
dvklopfenstein / ReactomePyExplore biomolecular pathways in Reactome from the command-line or a Python script
moosa-r / Rbioapirbioapi: User-Friendly R Interface to Biologic Web Services' API
reactome / Graph CoreModels the Reactome knowledgebase into a interconnected graph
decodebiology / GeneSCF InactiveGeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
AlbertoTh98 / Enrichment PipelineAutomatic R pipeline for FGSEA and classic enrichment (GO, KEGG, Reactome, Hallmark)
cwieder / PathIntegratePathIntegrate Python package for pathway-based multi-omics data integration
Augmented-Nature / Reactome MCP ServerModel Context Protocol server for accessing Reactome pathway and systems biology data.
emmaking-smith / HiTEAThe High Throughput Experimentation Analyzer (HiTEA) modules as described in "Probing the Chemical 'Reactome' with High Throughput Experimentation Data" (King-Smith et al.).
reactome / Content ServiceThe new Reactome REST API to access the data
reactome / Reactome ChatbotThis is Reactomes chatbot to its database and search index
reactome / Container:construction: Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". :construction:
reactome / ReactomeGSA TutorialsTutorials on how to use the ReactomeGSA R package.
reactome / Graph ImporterConverts the Reactome knowledgebase into a interconnected graph
PathwayAnalysisPlatform / PathwayMatcher DevPathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
reactome / Pwp DiagramGWT widget to visualise Reactome pathways
reactome / ReactomeGraph4RR package for interfacing with a Reactome Graph Database
