69 skills found · Page 1 of 3
qupath / QupathQuPath - Open-source bioimage analysis for research
Bayer-Group / PaquoPAthological QUpath Obsession - QuPath and Python conversations
ksugar / Qupath Extension SamQuPath extension for Segment Anything Model (SAM)
BIOP / Qupath Extension Cellposean extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
mattaq31 / GelGenieOpen-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available.
andreped / NoCodeSeg🔬 Code-free deep segmentation for computational pathology
qupath / Qupath Extension StardistQuPath extension to run StarDist nucleus detection
huangch / QustQuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
choosehappy / QuPathGeoJSONImportExportCoincides with blogpost for using geojson and shapely
BIOP / Qupath Extension WarpyImgLib2 RealTransform brought to QuPath
qupath / Qupath Extension InstansegThe official QuPath extension for InstanSeg
qupath / Qupath Extension WsinferQuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
MarkZaidi / QuASIList of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
qupath / Qupath Extension AlignQuPath extension to interactively align images
GoogleCloudPlatform / Qupath Chcapi ExtensionExtension to QuPath application adding support for reading from Google Cloud Healthcare API.
qupath / Qupath DocsQuPath documentation
qupath / Qupath Extension TemplateTemplate to help create a new QuPath extension
nickdelgrosso / ABBA QuPath RegistrationAnalysisA visualization app for 3D-registered data processed in ABBA and QuPath
sohmandal / ClassposeA foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
ksugar / Qupath Extension CellsparseQuPath extension for Cellsparse
