27 skills found
titipata / Pubmed Parser:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
Rostlab / NalafNLP framework in python for entity recognition and relationship extraction
Tian312 / PICO ParserA clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
titipata / Affiliation ParserSimple python parser for MEDLINE, Pubmed OA affiliation string
ropensci / TidypmcParse full text XML documents from Pubmed Central
thoppe / The Pile PubMedDownload, parse, and filter data PubMed, data-ready for The-Pile
christopherBelter / PubmedXMLParse PubMed XML into a data frame in R
dermatologist / CkblibTools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
danielfrees / ScrapemedScrapeMed: Data scraping for PubMed Central.
titipata / AffilparserConditional Random Field (CRF) Parser for Affiliation String in MEDLINE and Pubmed OA
nalomran / Pubmed2docWrite PubMed search results with two display options (citation or listview) to PDF or Word
PubData2XL / PubData2XLIs a Django Python web application to download PubMed data into a Microsoft Excel spreadsheet and XML files.
cstubben / PmcXMLTools for searching and parsing full text XML articles and tables in Pubmed Central
Xiaowen-JI / Semi Automation Of Systematic Review Of Clinical Trials In Medical Psychology With BERT ModelsWe employed pre-trained BERT models (distillBERT, BioBert, and SciBert) for text-classifications of the titles and abstracts of clinical trials in medical psychology. The average score of AUC is 0.92. A stacked model was then built by featuring the probability predicted by distillBERT and keywords of search domains. The AUC improved to 0.96 with F1, precision, and recall increasing to 0.95, 0.94, and 0.96 respectively. Training sample size of 100 results in the most cost-effective performance.
TurkuNLP / Pubmed ParsesSyntactic parses and named entity recognition for PubMed abstracts and PubMed Central full documents
holub008 / NbibPubMed citation format parser
hscells / TransmutePubMed/Medline query transpiler
WengLab-InformaticsResearch / PICO ParserA clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
Jason-Wang12 / KOL ParserParsing key opinion leaders through their pubmed publications
timofeiryko / Pretty Pubmed ParserEasy to use API wrapper for NCBI to get scientific papers by range, journal or topic. Usung Biopython and FastAPI
