37 skills found · Page 1 of 2
titipata / Pubmed Parser:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
genomoncology / BiomcpBioMCP: Biomedical Model Context Protocol
Rostlab / NalafNLP framework in python for entity recognition and relationship extraction
krassowski / Easy EntrezRetrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
rOpenHealth / RpubmedTools for extracting and processing Pubmed and Pubmed Central records.
jakelever / PubrunnerA framework for keeping biomedical text mining result up-to-date
kermitt2 / Biblio Glutton HarvesterOpen Access PDF harvester
ropensci / TidypmcParse full text XML documents from Pubmed Central
neuroquery / PubgetCollecting papers from PubMed Central and extracting text, metadata and stereotactic coordinates.
EleutherAI / Pile PubmedcentralA script for collecting the PubMed Central dataset in a language modelling friendly format.
rajdeepmondaldotcom / PmcgrabFrom PubMed Central ID to AI-Ready JSON in Seconds
arundasan91 / Pubmed Pdf Downloaderpubmed_pdf_downloader is a Python package that allows users to bulk download PDFs of articles from PubMed Central using PMCIDs.
danielfrees / ScrapemedScrapeMed: Data scraping for PubMed Central.
jakelever / BiotextGet a nicely-chunked local copy of the biomedical literature (to use for other projects)!
scienceai / Pubmed Schema OrgPubMed and PubMed central mapped to schema.org and expressed as JSON-LD and RDFa.
EFavDB / PubmedCentral ScraperR for webscraping (Pubmed Central)
konrad / JATS To MediawikiA PubMed Central to MediaWiki converter
tiadams / Pmc DownloaderBash scripts to bulk download full-text PDFs (or any other soruces) from PubmedCentral OA articles
akkineniramesh / Pubmedcentral GloveGlove applied to Pubmed Central BioC Corpus
cstubben / PmcXMLTools for searching and parsing full text XML articles and tables in Pubmed Central
