87 skills found · Page 1 of 3
ropensci / BiomartrGenomic Data Retrieval with R
linnabrown / Run DbcanRun_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
smith-chem-wisc / MetaMorpheusProteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
drostlab / OrthologrGenome wide orthology inference and dNdS estimation
jasonHKU0907 / Proteome Phenome AtlasNo description available
MannLabs / DirectlfqFast and accurate label-free quantification for small and very large numbers of proteomes
nadavbra / PwasProteome-Wide Association Study
MRCIEU / Epigraphdb PqtlThis is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.
CompOmics / Meta Proteome AnalyzerMetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
johon-lituobang / MDMatrix dissimilarity from the differences of Moments and sparsity
Coda-Research-Group / AlphaFindAlphaFind: Discover structure similarity across the entire known proteome
TattaBio / FlashPPILinear-time prediction of proteome-scale microbial protein interactions
Bitbol-Lab / ProteomeLMProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa
ikmb / Vcf2protAccelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).
globalbiobankmeta / Multi Ancestry PwmrCode for GBMI trans-ancestry proteome Mendelian randomization satellite paper
symbioticMe / ProBatchTools for Batch Effects Diagnostics and Correction
kierstenruff / RUFF KING Grammars Of IDRs Using NARDINI Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome
MannLabs / Proteomesoflifepython based queries for the proteomesoflife neo4j network database
smith-chem-wisc / ProteoformSuiteConstruction, quantification, and visualization of proteoform families
IBPA / DeepPepDeep proteome inference from peptide profiles
