133 skills found · Page 1 of 5
merenlab / AnvioAn analysis and visualization platform for 'omics data
mmatschiner / TutorialsTutorials on phylogenetic and phylogenomic inference
AstrobioMike / GToTreeA user-friendly workflow for phylogenomics
Cibiv / IQ TREEEfficient phylogenomic software by maximum likelihood
tseemann / Nullarbor:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
jamiemcg / BUSCO PhylogenomicsBUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins
moshi4 / ANIclustermapA tool for drawing ANI clustermap between all-vs-all microbial genomes
ODiogoSilva / TriFusionStreamlining phylogenomic data gathering, processing and visualization
faircloth-lab / Phylucesoftware for UCE (and general) phylogenomics
JLSteenwyk / ClipKITa multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
JLSteenwyk / PhyKITa UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
zhaotao1987 / SynNet PipelineWorkflow for Building Microsynteny Networks
vinuesa / Get PhylomarkersA pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
pblischak / HyDeHybridization detection using phylogenetic invariants
iqtree / PiqtreeA Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
zhangrengang / SOIRobust identification of orthologous Synteny with the Orthology Index
JLSteenwyk / Orthofishera broadly applicable tool for automated gene identification and retrieval
xtmtd / PLWSPhylogenomics from Low-coverage Whole-genome Sequencing
edgardomortiz / CaptusAssembly of Phylogenomic Datasets from High-Throughput Sequencing data
ForBioPhylogenomics / TutorialsTutorials on phylogenomic analyses for the ForBio Phylogenomics course
