22 skills found
broadinstitute / SsGSEA2.0Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
saezlab / CosmosRCOSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
PathwayAndDataAnalysis / CausalpathA project for exploring differentially active signaling paths related to proteomics datasets
WangJin93 / PCASThe ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for cancer research. It simplifies data analysis across multiple cancer types, enhancing tumor microenvironment under-standing and aiding the development of targeted therapies.
TheKinaseLibrary / Kinase LibraryThe Kinase Library: a Global Atlas of the Human Protein Kinome
PYangLab / PhosRPhosR is a package for the comprehensive analysis of phosphoproteomic data.
jdrudolph / PhotonPHOsphoproteomic dissecTiOn using Networks
evocellnet / Ptm HotspotsEstimate PTM hotspots in protein sequence alignments
ByrumLab / ProteoVizInteractive tool for Phosphoproteomics
biodavidjm / ArtMSAnalytical R Tools for Mass Spectrometry
saezlab / ShinyFUNKIFUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phosphoproteomic and metabolomic datasets.
ecnuzdd / PhosMapA Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data
PYangLab / ClueRCluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data
saezlab / KinactToolbox for Kinase Activity Scoring based on phosphoproteomic data
TCB-yehong / PhosPiRAn automatic pipeline to analyze phosphoproteomics
saezlab / PHONEMeSPHONEMeS (PHOsphorylation NEtworks for Mass Spectrometry) is an R package to model signalling networks based on untargeted phosphoproteomics
PYangLab / KSP PUELPositive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data
msayati / PhosphoproteomicsAnalysisThis is a project developed by students at UTRGV to analyze phospho-proteomics data
liuzan-info / PhosMapAn Ensemble Bioinformatic Platform to Empower Interactive Analysis of Quantitative Phosphoproteomics.
Lu-Group-UKHD / SmartPhosAn R package for joint analysis of proteomics and phosphoproteomics data
