88 skills found · Page 1 of 3
gbouras13 / Pharokkafast phage annotation program
wwood / SinglemNovelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
gbouras13 / PholdPhage Annotation using Protein Structures
mdmparis / Defense FinderSystematic search of all known anti-phage systems.
EBI-Metagenomics / Emg Viral PipelineVIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
replikation / What The PhageWtP: Phage identification via nextflow and docker or singularity
deprekate / PHANOTATEPHANOTATE: a gene caller for phages.
RyanCook94 / InpharedProviding up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
Kalan-Lab / Zolzol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
susiegriggo / PhyntenyPredict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
soedinglab / WIsHPredict prokaryotic host for phage metagenomic sequences
bobeobibo / PhigaroPhigaro is a scalable command-line tool for predicting phages and prophages
voorloopnul / Awesome PhagesA curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
soedinglab / SpacepharerSpacePHARER CRISPR Spacer Phage-Host pAiRs findER
zhenchengfang / PPR MetaA tool for identifying phages and plasmids from metagenomic fragments using deep learning
linsalrob / SphaePhage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
adamhockenberry / BacphlipA python library for predicting phage lifestyle based on genome sequence
ptynecki / PHAGES2050PHAGES2050 - a Comprehensive AI-based Framework for Phage Research & Therapy
Yasas1994 / JaegerJaeger is a quick and precise tool for detecting phages in sequence assemblies.
tseemann / PhastafIdentify phage regions in bacterial genomes for masking purposes
