27 skills found
ambj / MuPeXIMuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
pmartR / PmartRThe pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
nf-core / MhcquantIdentify and quantify MHC eluted peptides from mass spectrometry raw data
leonjessen / PepToolsPepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
haddocking / Cyclic PeptidesCyclic-peptide - protein complexes benchmark and associated scripts and data
mnielLab / NetTCR 2.2Sequence-based prediction of peptide-TCR interactions using paired chain data
Joseph-Ellaway / Ramachandran PlotterProgram to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
TalusBio / TimsseekA peptide-centric search tool for diaPASEF data.
hicops / HicopsHiCOPS: Computational framework for peptide identification from MS data through accelerated database search
FenyoLab / PGxPGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identified peptides onto their putative genomic coordinates.
avaamini / Protease Activity AnalysisPython toolkit and package for analyzing enzyme activity data
proteoTorch / ProteoTorchDeep learning and ultrafast machine learning for peptide identification of shotgun proteomics data.
Kristian-Karlic / MassSpectrum AnalyzerMassSpectrum-Analyzer is a tool for analysis of peptide spectral data
KeatingLab / Sortcery DesignDeposition of scripts for processing SORTCERY data for the design of mono-specific and bi-specific peptides.
danmaclean / PhosCalcThe Sainsbury Lab Tool for estimating the likelihood of phosphorylation at possible sites in a peptide from Mass Spec data
awgg-lab / AustralasiangenomesGenomic data repository for the Threatened Species Initiative and the ARC Centre for Innovations in Peptides and Protein Science
mohimanilab / NRPminerDiscover non-ribosomal peptide by integrating genomic and mass spectral data
hammerlab / Mhcflurry Icml Compbio 2016Data and analysis notebooks for Predicting Peptide-MHC Binding Affinities With Imputed Training Data
sannerlab / Benchmarking 2023Shared data from 2023 peptide docking benchmarking paper
Omicometrics / MS2PBPIPeptide fragment ion mass spectrum prediction by data mining methods
