46 skills found · Page 1 of 2
tjiangHIT / CuteSVLong read based human genomic structural variation detection with cuteSV
google / DeepconsensusDeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
PacificBiosciences / Pbmm2A minimap2 frontend for PacBio native data formats
yfukasawa / LongQCLongQC is a tool for the data quality control of the PacBio and ONT long reads.
PacificBiosciences / TrgtTandem repeat genotyping and visualization from PacBio HiFi data
ocxtal / Minialign[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads
PacificBiosciences / HiFi 16S WorkflowNextflow pipeline to analyze PacBio HiFi full-length 16S data
BirolLab / Arcs🌈Scaffold genome sequence assemblies using linked or long read sequencing data
PacificBiosciences / HiPhaseSmall variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
phasegenomics / FALCON PhaseFALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
deepomicslab / SpecHLASpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
PacificBiosciences / Sv BenchmarkPublic Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
PacificBiosciences / PbcoreA Python library for reading and writing PacBio® data files
aubombarely / Organelle PBAA software to assemble chloroplast and mitochodrial genomes using PacBio data
fmalmeida / Ngs PreprocessA pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
deepomicslab / SpecImmuneAccurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.
yjx1217 / LRSDAYLRSDAY: Long-read Sequencing Data Analysis for Yeasts
PacificBiosciences / HifihlaAn HLA star-calling tool for PacBio HiFi data types
tjiangHIT / RMETLrMETL - realignment-based Mobile Element insertion detection Tool for Long read
wen-biao / OM HiC ScaffoldingWorkflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
