13 skills found
thomasgurry / Amplicon Sequencing PipelinePipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
TillMacher / TaxonTableToolsTaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
MathiasEskildsen / ONT AmpSeqSnakemake workflow to generate OTU tables from barcoded ONT data
sipost1 / Kraken2OTUtableCreates a simple OTU table from Kraken2 report.
AlejandroAb / CASCABELAutomated pipeline for amplicon sequence analysis
HenschelLab / HierarchicalFeatureEngineeringHierarchical Feature Engineering for Microbiota (16S rRNA profiles), as provided by OTU tables of relative abundances.
GenomicaMicrob / OTUsamples2kronaSimple script to generate Krona charts for all samples in an OTU table file
alex-bagnoud / OTU Table To Bubble PlotR script to create from OTU/ASV tables nice bubble plots for your scientific publications
TlaskalV / NMDS ShinyApp for fast NMDS plots
tbj128 / MianMian is a platform for 16S rRNA OTU table visualization, data analysis, and feature selection
Listen-Lii / RrnDBcorrectOTUcororect 16S rRNA copy numbers by rrnDB database for a OTU table
fw1121 / PannenkoekA tool for generating LEfSe ready data from an OTU table and mapping file. Sample metadata is added as a new row based on user inputs.
JuliaTurkuDataScience / MicrobiomeAnalysis.jlFunctions and workflows for the analysis of microbiome data.
