43 skills found · Page 1 of 2
davidemms / OrthoFinderPhylogenetic orthology inference for comparative genomics
hillerlab / TOGATOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
edgardomortiz / CaptusAssembly of Phylogenomic Datasets from High-Throughput Sequencing data
BIONF / PhyloProfileA phylogenetic profile analysis tool
JLSteenwyk / OrthohmmImproved Inference of Ortholog Groups using Hidden Markov Models
ridgelab / JustOrthologsNo description available
stefanpeidli / MousipyTranslates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
hillerlab / TOGA2TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
JLSteenwyk / Orthosnapa tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
datasnakes / OrthoEvolutionAn easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Rinoahu / SwiftOrthoA high performance tool to identify orthologs and paralogs across genomes.
vitkl / OrthologsBioMARTOne-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
VIB-PSB / Ksratesksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.
chaoszhang / A ProASTRAL for PaRalogs and Orthologs
xgrau / Possvm OrthologyPossvm: find clusters of orthologs in phylogenies using species overlap & MCL
igordot / BabelgeneGene orthologs for model organisms in a tidy data format
BIONF / FDOGFeature-aware Directed OrtholoG search
glarue / ReciprologsFind reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
slncky / Slnckyslncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA orthologs, and characterizes conserved lncRNA evolution.
todddeluca / Reciprocal Smallest DistanceReciprocal Smallest Distance (RSD) is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.
