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OHDSI / CommonDataModelDefinition and DDLs for the OMOP Common Data Model (CDM)
OHDSI / PatientLevelPredictionAn R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
OHDSI / WhiteRabbitWhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
OHDSI / AchillesAutomated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
MIT-LCP / Mimic OmopMapping the MIMIC-III database to the OMOP schema
OHDSI / ETL SyntheaA package supporting the conversion from Synthea CSV to OMOP CDM
clinicalml / Omop LearnPython package for machine learning for healthcare using a OMOP common data model
ClarityNLP / ClarityNLPAn NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
OHDSI / ETL CMSWorkproducts to ETL CMS datasets into OMOP Common Data Model
callahantiff / OMOP2OBOOMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
OHDSI / MIMICMIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
OHDSI / CohortMethodAn R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
OHDSI / Criteria2Query[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
OHDSI / AthenaWeb application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
OHDSI / OHDSI In A BoxVirtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.
aphp / Cohort360 FrontEndA web application to find patients, build cohorts and visualize health records
OHDSI / ETL CDMBuilderETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases
omoponfhir / Omoponfhir MainMain OMOPonFHIR Settings
USM-CHU-FGuyon / BlendedICUOMOP standardization pipeline for ICU databases
OHDSI / EunomiaAn R package that facilitates access to a variety of OMOP CDM sample data sets.
