116 skills found · Page 1 of 4
scverse / Scvi ToolsDeep probabilistic analysis of single-cell and spatial omics data
merenlab / AnvioAn analysis and visualization platform for 'omics data
ChiLiubio / MicroecoAn R package for downstream data analysis of microbiome omics data
scverse / DecouplerPython package to perform enrichment analysis from omics data.
SSSYDYSSS / TransProRAnalysis and visualization of multi-omics data. In ongoing development: multi-modal fusion, sparse learning, and spatio-temporal effects...
mengxu98 / ScopAn end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data.
txWang / MOGONETMOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
epigenelabs / InmooseInMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
reimandlab / ActivePathwaysIntegrative pathway enrichment analysis of multivariate omics data
Lotfollahi-lab / NichecompassEnd-to-end analysis of spatial multi-omics data
zhangxiaoyu11 / OmiEmbedMulti-task deep learning framework for multi-omics data analysis
BIMSBbioinfo / MauiMulti-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
pmartR / PmartRThe pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
liubingdong / EasyMultiProfilerThe EasyMultiProfiler package aims to offer a user-friendly and efficient multi-omics data analysis tool on the R platform. It facilitates various essential tasks related to microbiome, genome, and metabolite downstream analysis, providing a seamless workflow from start to finish.
fgcz / ProlfquaDifferential Expression Analysis tool box R lang package for omics data
jzhoulab / QuasildrQuasilinear data representations for single-cell omics data analysis
abbvie-external / OmicNavigatorOpen-Source Software for Omic Data Analysis and Visualization
interactivereport / XOmicsShinyxOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf097.
databio2022 / GraphBioGraphBio: a shiny web app to easily perform popular visualization analysis for omics data
seasoncloud / AlleloscopeAlleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
