197 skills found · Page 1 of 7
scverse / Scvi ToolsDeep probabilistic analysis of single-cell and spatial omics data
Starlitnightly / OmicverseA python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
mikelove / Awesome Multi OmicsList of software packages for multi-omics analysis
merenlab / AnvioAn analysis and visualization platform for 'omics data
bioFAM / MOFA2Multi-Omics Factor Analysis
drieslab / GiottoSpatial omics analysis toolbox
ChiLiubio / MicroecoAn R package for downstream data analysis of microbiome omics data
gustaveroussy / SopaTechnology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
scverse / DecouplerPython package to perform enrichment analysis from omics data.
bioFAM / MOFAMulti-Omics Factor Analysis
assemblerflow / FlowcraftFlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
SSSYDYSSS / TransProRAnalysis and visualization of multi-omics data. In ongoing development: multi-modal fusion, sparse learning, and spatio-temporal effects...
mengxu98 / ScopAn end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data.
txWang / MOGONETMOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
SolvingLab / OmixBenchA Systematic Evaluation Framework for Large Language Models in Multi-omics Analysis
epigenelabs / InmooseInMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
tjhwangxiong / TCGAplotA number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
reimandlab / ActivePathwaysIntegrative pathway enrichment analysis of multivariate omics data
BIMSBbioinfo / VoltRonSpatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
TianGzlab / OmicsClawConversational & memory-enabled AI research partner for multi-omics analysis. From biological idea to full research paper.
