29 skills found
cgohlke / TifffileRead and write TIFF files.
hms-dbmi / VivLibrary for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
glencoesoftware / Raw2ometiffRaw format to OME-TIFF converter
ciccalab / SIMPLISIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
glencoesoftware / NGFF ConverterNGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
nf-core / McmicroAn end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
apeer-micro / Apeer Ometiff LibraryEasily read and write ome-tiff images in python
Euro-BioImaging / BatchConvertA nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
filippocastelli / PyometiffOME-TIFF IO in python
tlnagy / OMETIFF.jlI/O operations for OME-TIFF files in Julia
BodenmillerGroup / ImctoolsTools to handle IMC data
Mmasoud1 / HistoJSHistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
labsyspharm / Ome Tiff Pyramid ToolsPython tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
stefano-malacrino / Isyntax To OmetiffPython script to comvert Philips iSyntax files to OME-TIFF
pymmcore-plus / Ome WritersUnified API for streaming camera frames to either OME-TIFF or OME-Zarr format
vibbits / Nis2pyrPython utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.
Romain-Laine / TCSPC Image SimulationThis code provides an easy way to simulate TCSPC image data which includes effect of the IRF, background after-pulsing and laser repetition rate. Images are saved as OME.tiff using Bioformat.
ome / Ome Files CppOME Files is a C++ library for reading and writing data using the open and standard OME-TIFF file format using the OME data model
SPerrott22 / Deepcell To QuPathpipeline that converts Deepcell generated instance segmentation masks of nuclei from an ome-tiff to Cell Objects with auto-generated cytoplasms in QuPath
Hirriririir / OlympusVSI To SVS Or OMETiffTo transform OlympusVSI slides to OME-TIFF or SVS in batch
