36 skills found · Page 1 of 2
nextstrain / NcovNextstrain build for SARS-CoV-2
hodcroftlab / CovariantsReal-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
nextstrain / NextcladeViral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
nextstrain / Nextstrain.orgThe Nextstrain website
blab / Sars Like CovThis is a one-off Nextstrain build for SARS-like coronaviruses
nextstrain / Seasonal FluScripts. config, and snakefiles for seasonal-flu nextstrain builds
nextstrain / MpoxNextstrain build for mpox virus
nextstrain / Nextclade DataDatasets for https://github.com/nextstrain/nextclade
nextstrain / Ncov IngestA pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
nextstrain / CliThe Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
nextstrain / Avian FluNextstrain build for avian influenza viruses
blab / Beta CovOne-off nextstrain build for betacoronavirus
nextstrain / Docs.nextstrain.orgUmbrella documentation project for Nextstrain
nextstrain / Ncov Clades SchemaRenders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
nextstrain / DengueNextstrain build for dengue virus
nextstrain / Docker BaseDocker image build for nextstrain/base
nextstrain / RsvWorkflow for RSV analyses on Nextstrain.org
nextstrain / ZikaNextstrain build for Zika virus
BCCDC-PHL / FlufloNextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
blab / Ncov OmicronNextstrain build targeted to Omicron
