22 skills found
nf-core / ModulesRepository to host tool-specific module files for the Nextflow DSL2 community!
vib-singlecell-nf / Vsn PipelinesA repository of pipelines for single-cell data in Nextflow DSL2
evotools / Nf LOA Nextflow workflow to generate lift over files for any pair of genomes
sanger-tol / GenomenoteNextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
telatin / Nextflow ExampleA simple DSL2 workflow: tutorial
peterk87 / Sublime NextflowNextflow workflow syntax highlighting and snippets for Sublime Text 4
iraiosub / Riboseq FlowA Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.
sanger-tol / ReadmappingNextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
sanger-tol / BlobtoolkitNextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.
sanger-tol / CurationpretextA Nextflow DSL2 pipeline for pretext generation in curation
sanger-tol / VariantcallingNextflow DSL2 pipeline to call variants on long read alignment.
mskcc-omics-workflows / ModulesA repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
tutkuyaras / PGSXplorerAutomatized Polygenic Score Prediction
GiantSpaceRobot / TsRNAsearchNextflow DSL2 tRNA and ncRNA fragment identification pipeline for small RNA-seq data
AustralianBioCommons / Nextflow DSL2 TemplateTemplate for creating Nextflow DSL2 pipelines
sanger-tol / AsccA Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.
Svvord / ScFM EvalA reproducible Nextflow DSL2 framework for standardized deployment, execution, and evaluation of single-cell foundation models (scFMs) with containerized environments and automated embedding inference.
np-core / ModulesNextflow DSL2 implementations of pipeline modules for bacterial (nanopore) genomics :lizard:
annacprice / Autodatabaseautomated kraken database build using nextflow DSL2
eipm / Hello Mess NfA Nextflow pipeline to experiment with DSL2 + Zero Mess
