19 skills found
pirovc / Ganonganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
FOI-Bioinformatics / FlextaxdFlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
voorloopnul / PipetaxonPipeTaxon exposes the ncbi taxonomy database as a REST API.
banhbio / Taxonomy.jlJulia package to handle the NCBI Taxonomy database.
Picani / FastaxMake phylogenetic trees and lineages from the NCBI Taxonomy database
tetsufmbio / TaxallnomyTaxallnomy is a balanced taxonomic tree database based on NCBI Taxonomy that provides taxonomic lineages according to the taxonomic ranks of Linnean classification system.
bakerccm / Entrez QiimeA utility to generate input files for taxonomy assignment in QIIME from the NCBI database
wegnerce / Taxomiasan easy to use implementation of the NCBI taxonomy database for daily use
pvanheus / Ncbitaxonomya Rust crate for working with a local copy of the NCBI Taxonomy database
acorg / Ncbi Taxonomy DatabaseHow to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher
ctb / 2022 Assembly Summary To LineagesConvert NCBI assembly_summary files into sourmash taxonomy databases.
pvanheus / Diamond Add TaxonomyTools for working with NCBI taxonomy database (and DIAMOND output)
KeplerBiocomputing / Community Entrez Starter KitGet started now with your own local copy of Entrez Gene, Homologene, and NCBI Taxonomy annotations. Automatically create the MySQL database, retrieve tables from NCBI, and populate your local database with a single command.
molbiodiv / BcdatabaserA pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data
audy / Ncbi Taxonomy BotBot that toots when NCBI updates their taxonomy database
darcyabjones / Gi To TaxFinds taxonomic information for a given set of genbank identifiers, using the NCBI taxonomy database.
AdeBC / Living Tree ToolkitTaxonomical abundance remapping and feature engineering for taxonomic profiles.
blinard-BIOINFO / NCBITaxonomyTools to build a copy of the NCBI Taxonomy database in a local SQL schema and query it via a Java package.
gservera / TaxonomyKitTaxonomyKit is a powerful, handy and cross-platform library that helps you work with taxonomy data from the NCBI databases. The core of the Taxonomist app.
