8 skills found
pirovc / Genome Updatergenome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.
pirovc / Ganonganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
muellan / Metacachememory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
phac-nml / Refseq MasherMash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
ryjohnson09 / Bacteria Genome PullDownload latest bacterial sequencing assembly files from NCBI database (RefSeq or Genbank)
pmenzel / Download Refseq GenomesPerl script to download genomes within a clade from NCBI Refseq
dritoshi / GenesearchrFast full-text search in NCBI RefSeq, UniProt-KB and Genome DNA sequence
jdieramon / RefseqRCommon Computational Operations Working with RefSeq Entries (GenBank, NCBI)
