18 skills found
angelolab / Ark AnalysisIntegrated pipeline for multiplexed image analysis
ciccalab / SIMPLISIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
huBioinfo / CytoCommunityA spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
Mmasoud1 / HistoJSHistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
hula-ai / DAMAPytorch implementation of "DAMA - Multiplexed Immunofluorescence Brain Image Analysis Using Self-Supervised Dual-Loss Adaptive Masked Autoencoder"
UNITES-Lab / Mew[ECCV 2024] Code for the paper "Mew: Multiplexed Immunofluorescence Image Analysis through an Efficient Multiplex Network"
FrancisCrickInstitute / TRACERx PHLEXModular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
anyuzx / HIPPS DIMES4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method
BodenmillerGroup / ImcPluginsCPCellProfiler plugins for multiplexed image analysis
tpecot / DeepLearningBasedSegmentationForBiologists3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehensive image analysis pipeline for immune profiling of 2D multiplexed images
PierreBSC / BalaganPackage for analysis and experimental design of multiplexed imaging data
estorrs / Multiplex Imaging PipelineA pipeline for multiplex imaging analysis
KHChenLab / Split FishA multiplexed FISH image analysis pipeline used to analyze split-FISH data. Publication available here:https://www.nature.com/articles/s41592-020-0858-0
lopaavol / Mihc Suppl SoftwareCode repository for paper Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis
aalokpatwa / Rasp MibiComputational pipeline for multiplexed analysis of tumors.
deMirandaLab / PENGUINRapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
farkkilab / TribusCell type based analysis of multiplexed imaging data
hubmapconsortium / MATRICS AMultiplexed Image Three-D Reconstruction and Integrated Cell Spatial -Analysis
