6 skills found
nf-core / FastquorumPipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
ARUP-NGS / BMFtoolsBarcoded Molecular Families
pughlab / ConsensusCruncherConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
xuchang116 / SmCountersmCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller", BMC Genomics, 2017 18:5. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3425-4
oicr-gsi / DebarcerDebarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
mskcc / MarianasSoftware for processing molecular barcoding (UMI)-based NGS data
