66 skills found · Page 1 of 3
sqjin / CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
jinworks / CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
IOBR / IOBRIOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
LirongWu / MAPE PPICode for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
digitalcytometry / EcotyperEcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
Danko-Lab / BayesPrismA Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
prov-gigatime / GigaTIMEGigaTIME: Multimodal AI generates virtual population for tumor microenvironment modeling (Cell)
yi-zhang / MetaTiMEMetaTiME: Meta-components in Tumor immune MicroEnvironment
AntonioDeFalco / SCEVANR package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
10XGenomics / HumanColonCancer VisiumHDAssociated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
Danko-Lab / TEDa fully Bayesian approach to deconvolve tumor microenvironment
Yelab2020 / CottrazmConstruct Tumor Transition Zone Microenvironment
riazn / Bms038 AnalysisCode and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
LirongWu / Prompt DDGCode for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning"
10XGenomics / Janesick Nature Comms 2023 CompanionCode companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
zdq0808 / TMEscoreCalculating Tumor microenvironment score
ajitjohnson / ImsigImmune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
spatkar94 / HistoTMELeveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
wuaipinglab / ImmuCCCell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
Lotfollahi-lab / MintflowGeneration of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data
