53 skills found · Page 1 of 2
rmarkello / AbagenA toolbox for working with Allen Human Brain Atlas microarray expression data
ramhiser / DatamicroarrayA collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
epigenelabs / PyComBatpyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, in microarray expression data.
bioinformatics-core-shared-training / Microarray AnalysisMaterials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
greenelab / TDMR package for normalizing RNA-seq data to make them comparable to microarray data.
greenelab / RNAseq Titration ResultsCross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
tlatkowski / Deep Learning Gene ExpressionDeep learning methods for feature selection in gene expression autism data.
kivancguckiran / Microarray ClassificationDNA Microarray Gene Expression Data Classification Using SVM and MLP with Feature Selection Methods Relief and LASSO
mematt / Ml4calibrated450kThis is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estimating class probabilities for personalized cancer diagnostics on DNA methylation microarray data"
Lindsey-LCFoong / How To Analyze GEO Microarray DataGSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s
IGS / GEARThe gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
flo-compbio / PyaffypyAffy: Processing raw data from Affymetrix expression microarrays in Python.
ASPteaching / Analisis De Datos Omicos Materiales Para Un CursoCode and lecture notes for a microarray data analysis course.
lydiaMyr / ImmuCellAIImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data
ASPteaching / Omics Data Analysis Case Study 1 MicroarraysThis repository contains an example of how to analyze microarrays data using bioconductor
kivancguckiran / Microarray DataMicroarray datasets in CSV tarballs for MATLAB and Python
csgillespie / Bmc MicroarrayThis repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioConductor: a case study using yeast2 Affymetrix arrays BMC Research Notes, 3:81.
VirtualPharmacist / VpVirtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take variants data (VCF format), microarray SNP genotyping data and high-throughput sequencing data as input, and report to the users how the variants in their personal genomes impact their drug response, including drug efficacy, dosage and toxicity.
oaxiom / Glbase3glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq data. This is now the main repository
kr-prince / MRMRThis is an App developed in Python to implement the algorithm for minimum redundancy maximum ralevance. The formulation was based on a research paper from Chris Ding and Hanchuan Peng (Minimum Redundancy Feature Selection from Microarray Gene Expression Data).
