36 skills found · Page 1 of 2
ablab / SpadesSPAdes Genome Assembler
nf-core / MagAssembly and binning of metagenomes
smaegol / PlasFlowSoftware for prediction of plasmid sequences in metagenomic assemblies
linxingchen / CobraA tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
marbl / MetaCompassMetaCompass: Reference-guided Assembly of Metagenomes
vinisalazar / MetaphorMetaphor: a general-purpose workflow for assembly and binning of metagenomes
koszullab / MetaTORMetagenomic binning based on Hi-C data
leylabmpi / DeepMAsEDDeep learning for Metagenome Assembly Error Detection
ablab / MetaGTPipeline for metagenome and metatranscriptome joint assembly
alexmsalmeida / VirsearchSnakemake workflow to detect and classify viruses in metagenome assemblies.
hacchy / MetaVelvetAn extension of Velvet assembler to de novo metagenome assembly from short sequence reads
marbl / BinnacleBinnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
kangxiongbin / StrainXpressStrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution.
lbcb-sci / MADReStrain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach
tseemann / MokkaAnnotate your metagenome assemblies
leylabmpi / ResmicoIdentifying misassemblies via deep learning
emblab-westlake / ARGfamsFast and robust identificaiton of antibiotic resistance genes (ARGs) from microbial genomes and metagenome assemblies using ARGfams, a high-quality and manually cruated subdatabase of profile hidden Markov models for ARGs
bioinf-mcb / Metagenome AssemblyWDL Workflow for metagenome assembly
maxemil / PhyloMagnetscreening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
Nimauric / MaplerA metagenome assembly and evaluation pipeline, focused on hi-fi long reads, but with support for lo-fi long reads and hybrid assemblies
